Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs2205211 chr14:80412408 G/T 1.2E-6 119 9.85 38.58 42.73 KM Plot
THYM rs2209145 chr13:22519469 T/C 0.000281 118 41.77 32.7 27.1 KM Plot
THYM rs221990 chr3:64233503 C/T 0.000161 119 49.4 29.32 25.5 KM Plot
THYM rs2242951 chr21:45535002 G/T 0.000131 117 37.73 50.65 28.43 KM Plot
THYM rs2274911 chr6:117130704 G/A 5.68E-5 115 19.03 50.97 38.83 KM Plot
THYM rs2276904 chr4:1349029 G/A 0 118 42.25 40.67 4.13 KM Plot
THYM rs2279829 chr3:147106319 C/T 2.95E-6 115 44.38 35 25.83 KM Plot
THYM rs2281906 chr9:133996439 C/T 0.000113 116 39.75 42.33 12.75 KM Plot
THYM rs2283194 chr11:2722667 G/A 0 119 39.75 50.07 2.9 KM Plot
THYM rs2286989 chr7:76142872 A/G 0.000309 116 41.22 45.87 28.43 KM Plot
THYM rs2286990 chr7:76142930 C/T 0.000309 116 41.22 45.87 28.43 KM Plot
THYM rs2287691 chr19:41286163 C/G 3.4E-13 118 44.38 35.13 6 KM Plot
THYM rs2287783 chr16:24831727 C/T 3.44E-6 119 49.73 28.43 31.37 KM Plot
THYM rs2299817 chr21:45486270 A/T 0.000107 119 28.43 50.65 38.58 KM Plot
THYM rs2303084 chr16:24834581 G/C 4.0E-6 117 46.43 28.43 31.37 KM Plot